eprintid: 2086
rev_number: 8
eprint_status: archive
userid: 327
dir: disk0/00/00/20/86
datestamp: 2016-12-05 03:40:11
lastmod: 2016-12-05 03:40:11
status_changed: 2016-12-05 03:40:11
type: article
metadata_visibility: show
creators_name: Dang, Thanh Hai
creators_name: Nguyen, Dai Thanh
creators_name: Pham, Thi Minh Trang
creators_name: Dang, Cao Cuong
creators_name: Hoang, Kim Phuc
creators_name: Pham, Bao Son
creators_name: Le, Sy Vinh
creators_name: Le, Si Quang
creators_name: Phan, Thi Thu Hang
creators_name: Do, Duc Dong
creators_id: hai.dang@vnu.edu.vn
creators_id: sonpb@vnu.edu.vn
creators_id: vinhls@vnu.edu.vn
title: Preliminary results on the whole genome analysis of a Vietnamese individual
ispublished: pub
subjects: IT
divisions: fac_fit
abstract: We present some preliminary results on the whole genome analysis of an anonymous Kinh Vietnamese (KHV) individual that was deeply sequenced to 34-fold using the Illumina sequencing technology. The sequenced genome covered 99.85% of the human reference genome (GRCh37). We discovered (1) 3408825 single polymorphism nucleotides (SNPs) of which 41396 (1.2%) were novel, (2) 654024 short indels of which 35263 (5.4%) were novel, i.e. not present in the dbSNP and 1000 genomes project databases. We also detected 10611 large SVs (the length  ≥ 100bp) of  four types, i.e. large indels (90.6%), the inter-chromosomal translocations (3.1%), the inversions (3.4%) and the intra-chromosomal translocations (2.9%). This study is our initial step toward large-scale projects on Vietnamese population.
date: 2014
date_type: published
publisher: VNU Journal of Science
full_text_status: none
publication: VNU Journal of Computer Science and Communication Engineering
volume: 30
number: 3
pagerange: 31-35
refereed: TRUE
issn: 0866-8612
citation:   Dang, Thanh Hai and Nguyen, Dai Thanh and Pham, Thi Minh Trang and Dang, Cao Cuong and Hoang, Kim Phuc and Pham, Bao Son and Le, Sy Vinh and Le, Si Quang and Phan, Thi Thu Hang and Do, Duc Dong  (2014) Preliminary results on the whole genome analysis of a Vietnamese individual.  VNU Journal of Computer Science and Communication Engineering, 30  (3).   pp. 31-35.  ISSN 0866-8612