Items where Author is "Le, Sy Vinh"

Nguyen, Duc Canh and Dang, Cao Cuong and Le, Sy Vinh and Bui, Quang Minh and Hoang, Thi Diep (2020) pQMaker: empirically estimating amino acid substitution models in a parallel environment. In: 2020 12th International Conference on Knowledge and Systems Engineering (KSE), November 12-14, 2020, Can Tho Viet Nam.

Le, Thu and Le, Sy Vinh and Do Duc, Dong and Bui, Thang and Nguyen, Thao (2020) iK-means: an improvement of the iterative k-means partitioning algorithm. In: KSE 2020, Can Tho.

Le, Thu and Le, Sy Vinh (2020) mPartition: A Model‐Based Method for Partitioning Alignments. Journal of Molecular Evolution, 88 . pp. 641-652.

Le, Thu and Le, Sy Vinh (2020) A protein alignment partitioning method for protein phylogenetic inference. In: RIVF 2020.

Nguyen, Thao and Le, Sy Vinh (2019) A Hybrid Approach to Optimize the Number of Recombinations in Ancestral Recombination Graphs. In: ICBBB.

Le, Kim Thu and Dang, Cao Cuong and Le, Sy Vinh (2018) Building a specific amino acid substitution model for dengue viruses. In: 2018 10th International Conference on Knowledge and Systems Engineering (KSE) (KSE'18), 1-3 November 2018.

Hoang, Thi Diep and Le, Sy Vinh and Flouri, Tomas and Stamatakis, Alexandros and von Haeseler, Arndt and Bui, Quang Minh (2018) MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation. BMC Evolutionary Biology, 18 . ISSN 1471-2148

Hoang, Thi Diep and Chernomor, Olga and Arndt, von Haeseler and Bui, Quang Minh and Le, Sy Vinh (2018) UFBoot2: Improving the Ultrafast Bootstrap Approximation. Molecular Biology and Evolution, 35 (2). pp. 518-522. ISSN 0737-4038

Hoang, Thi Diep and Le, Sy Vinh and Tomas, Flouri and Alexandros, Stamatakis and Arndt, von Haeseler and Minh, Bui (2018) Fast phylogenetic maximum parsimony tree inference and bootstrap approximation. BMC Evolutionary Biology, 18:11 (18). p. 11.

Nguyen, Thi Phuong Thao and Le, Sy Vinh (2017) Building minimum recombination ancestral recombination graphs for whole genomes. In: 2017 4th NAFOSTED Conference on Information and Computer Science (NICS 2017), 24-25 November 2017, Hanoi, Vietnam.

Le, Sy Vinh and Nguyen, Duc Canh and Bui, Ngoc Thang and Do, Thi Thu Hang and Duong, Quoc Chinh and Tran, Cong Hoang and Le, Ba Hong Minh and Pham, Thi Dieu Linh (2017) Genomedics: Whole exome analysis system for clinical studies. In: The 9th International Conference on Knowledge and Systems Engineering (KSE), 19-21 October 2017, Hue, Vietnam.

Le, Sy Vinh and Dang, Cuong and Le, Quang (2017) Improved mitochondrial amino acid substitution models for metazoan evolutionary studies. BMC Mol Evol, 17 (136).

Le, Sy Vinh and Le, Truc and Le, Van Khanh and Kieu, Huynh and Do, Hang (2017) A mutation in GABRB3 associated with Dravet syndrome. American Journal of Medical Genetics Part A, 9999 . pp. 1-6. ISSN 1552-4833

Nguyen, Thi Phuong Thao and Le, Sy Vinh and Ho, Bich Hai and Le, Si Quang (2016) Building ancestral recombination graphs for whole genomes. In: SW4PHD: the 2016 Scientific Workshop for PhD Students, 26 March 2016, Hanoi.

Nguyen, Thao and Le, Sy Vinh and Ho, Hai and Le, Si Quang (2016) Building ancestral recombination graphs for whole genomes. IEEE/ACM Transactions on Computational Biology and Bioinformatics . ISSN 1545-5963 (In Press)

Nguyen, Dai Thanh and Pham, Thi Minh Trang and Dang, Thanh HaI and Nguyen, Ha Anh Tuan and Le, Si Quang and Bui, Quang Minh and Dao, Quang Minh and Pham, Bao Son and Le, Sy Vinh (2015) Building population-specific reference genomes: A case study of Vietnamese reference genome. In: KSE: the 2015 International Conference on Knowledge and Systems Engineering, 8-10 October 2015, Ho Chi Minh city, Vietnam.

Dang, Thanh Hai and Nguyen, Dai Thanh and Pham, Thi Minh Trang and Le, Si Quang and Phan, Thi Thu Hang and Dang, Cao Cuong and Hoang, Kim Phuc and Nguyen, Huu Duc and Do, Duc Dong and Bui, Quang Minh and Pham, Bao Son and Le, Sy Vinh (2015) Whole Genome Analysis of a Vietnamese Trio. Journal of Bioscience, 40 (1). pp. 114-123. ISSN 0250-5991

Nguyen, Dai Thanh and Pham, Thi Minh Trang and Dang, Thanh Hai and Nguyen, Ha Anh Tuan and Le, Si Quang and Bui, Quang Minh and Dao, Quang Minh and Pham, Bao Son and Le, Sy Vinh (2015) AB050. Building population-specific reference genomes: a case study of Vietnamese reference genome. Annals of translational medicine, 3 (Suppl). ISSN 2305-5839

Bui, Ngoc Thang and Le, Sy Vinh and Ho, Tu Bao (2015) MVRM: A Hybrid Approach to Predict siRNA Efficacy. In: KSE: the 2015 International Conference on Knowledge and Systems Engineering, 8-10 October 2015, Ho Chi Minh city, Vietnam.

Dang, Cao Cuong and Le, Sy Vinh and Gascuel, Oliver and Hazes, Bart and Le, Si Quang (2014) FastMG: a simple, fast, and accurate maximum likelihood procedure to estimate amino acid replacement rate matrices from large data sets. BMC Bioinformatics . ISSN 1471-2105

Dang, Thanh Hai and Nguyen, Dai Thanh and Pham, Thi Minh Trang and Dang, Cao Cuong and Hoang, Kim Phuc and Pham, Bao Son and Le, Sy Vinh and Le, Si Quang and Phan, Thi Thu Hang and Do, Duc Dong (2014) Preliminary results on the whole genome analysis of a Vietnamese individual. VNU Journal of Computer Science and Communication Engineering, 30 (3). pp. 31-35. ISSN 0866-8612

Do Duc, Dong and Le, Sy Vinh and Hoang, Xuan-Huan (2013) ACOHAP: An Efficient Ant Colony Optimization for the Haplotype Inference by Pure Parsimony Problem. Swarm Intelligence, 7 (1). pp. 63-77.

Do Duc, Dong and Le, Sy Vinh and Hoang, Xuan-Huan (2013) ACOHAP: An Efficient Ant Colony Optimization for the Haplotype Inference by Pure Parsimony Problem. Swarm Intelligence, 7 (1). pp. 63-77. ISSN 1935-3812

Nguyen, Son Hoang and Le, Sy Vinh and Le, Si Quang (2012) Detecting Bad SNPs from Illumina BeadChips Using Jeffreys Distance. In: 2012 Fourth International Conference on Knowledge and Systems Engineering (KSE), 17-19 August 2012, Danang, Vietnam.

Nguyen, Ha Anh Tuan and Le, Sy Vinh and Le, Si Quang (2012) A Maximum Likelihood Method for Detecting Bad Samples from Illumina BeadChips Data. In: 2012 Fourth International Conference on Knowledge and Systems Engineering (KSE), 17-19 August 2012, Danang, Vietnam.

Dang, Cao Cuong and Lefort, Vincent and Le, Sy Vinh and Le, Si Quang and Gascuel, Olivier (2011) ReplacementMatrix: a Web Server for Maximum-Likelihood Estimation of Amino Acid Replacement Rate Matrices. Bioinformatics, 27 (19). pp. 2758-2760.

Le, Van Dat and Dang, Cao Cuong and Le, Si Quang and Le, Sy Vinh (2011) A Fast and Efficient Method for Estimating Amino Acid Substitution Models. In: 2011 Third International Conference on Knowledge and Systems Engineering (KSE), 2011.

Nguyen, Van Sau and Dang, Cao Cuong and Le, Si Quang and Le, Sy Vinh (2011) Protein Type Specific Amino Acid Substitution Models for Influenza Viruses. In: 2011 Third International Conference on Knowledge and Systems Engineering (KSE), 2011.

Dang, Cao Cuong and Le, Si Quang and Gascuel, Olivier and Le, Sy Vinh (2010) FLU, an Amino Acid Substitution Model for Influenza Proteins. BMC Evolutionary Biology, 10 (1). p. 99.

Dang, Cao Cuong and Le, Sy Vinh and Le, Si Quang (2009) Influenza-specific Amino Acid Substitution Model. In: International Conference on Knowledge and Systems Engineering, 2009. KSE '09.